Converting SNPs to CAPS and dCAPS Marker Using dCAPS Finder
Author: Sungwoo Lee, The Ohio State University This tutorial provides an overview of CAPS and dCAPS markers as well as the steps required to design CAPS and dCAPS markers from previously identified...
View ArticleOverview of the Pennsylvania State University Tomato Breeding Program
Author: Majid R. Foolad, The Pennsylvania State University This page provides an overview of the Pennsylvania State University tomato breeding program as a SlideShare presentation.The tomato genetics...
View ArticleAnalysis of Variance: Evaluating Differential Protein Expression
Author: Shaun Broderick, The Ohio State University This tutorial uses a case study in petunia to demonstrate ANOVA in SAS using the "PROC GLM" and "PROC VARCOMP" commands. Sample SAS code is provided....
View ArticleCreating a Kinship Matrix Using Microsatellite Analyzer
Author: Zhifen Zhang, The Ohio State University This tutorial provides an overview of kinship matrices. An example of using Microsatellite Analzyer (MSA) to create a kinship matrix for association...
View ArticleCombating the Threat of African Stem Rust Podcast
Authors: Brian Steffenson, University of Minnesota; Barbara Alonso, University of California Berkeley; Peggy Lemaux, University of California Berkeley This podcast explains stem rust, its origins,...
View ArticleSelective Mapping Tutorial
Author: Jose Luis Zambrano Mendoza, The Ohio State University This selective mapping tutorial, presented in pdf and slideshare formats, introduces selective QTL mapping based on analysis of subsets of...
View ArticleR/QTL Tutorial
Author: Hamid Ashrafi, University of California, Davis This tutorial instructs users how to locate, download, and load R and R/QTL software. The tutorial also provides users with R/QTL commands used...
View ArticleGGT2 - Graphical Genotypes Software Tutorial
Author: Nancy Huarachi Morejon, The Ohio State University The attached tutorial teaches users how to download and install GGT2 software. In addition, the tutorial introduces users to basic GGT2...
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Estimation of Linkage Disequilibrium Decay
Author: M. Awais Khan, University of Illinois, Urbana-Champaign This tutorial introduces the concept of linkage disequilibrium (LD) using sample data. LD and LD decay in a gene are estimated using...
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Association Mapping Using TASSEL Software
Author: M. Awais Khan, University of Illinois, Urbana-Champaign This article introduces the concept of association mapping and the related concepts of linkage disequilibrium (LD), kinship, and...
View ArticleTomato, Data Sets
Application of ANOVA for Plant Breeding: Single Marker Analysis Example (Raw Data Set) Downstream Analysis of SNP Markers Using MSA, GGT, and STRUCTURE Software Genotyping with Molecular Markers:...
View ArticleData Sets
Application of ANOVA for Plant Breeding: Single Marker Analysis Example (Raw Data Set) Bacterial Spot Start-to-Finish Phenotypic and Genotypic Data Files Downstream Analysis of SNP Markers Using MSA,...
View ArticleTomato, Analysis with SAS
Application of ANOVA for Plant Breeding: Single Marker Analysis Example using ANOVA in a Balanced Population (Sample SAS Program) Application of ANOVA for Plant Breeding: Single Marker Analysis...
View ArticleAnalysis with SAS
Analysis of Variance: Evaluating Differential Protein Expression Application of ANOVA for Plant Breeding: Single Marker Analysis Example using ANOVA in a Balanced Population (Sample SAS Program)...
View ArticleAnalysis with R
R/QTL Tutorial rrBLUP Package in R for Genomewide Selection PBGworks T211
View ArticleTomato, Analysis with R
R/QTL Tutorial rrBLUP Package in R for Genomewide Selection PBGworks T203,211
View ArticleGenomic Mapping and QTL Analysis
Association Analysis and Genomic Selection in Tomato Breeding Association Genetics: Conifer Genomics Module 11 Downstream Analysis of SNP Markers Using MSA, GGT, and STRUCTURE Software Downstream...
View ArticleTomato, Video
2010 Tomato Disease Workshop Presentations Accessing Sequence Resources Bioinformatics 101 Cross-Pollinating Tomatoes for Hybrid Production and Population Development Developing the Breeder's Toolbox...
View ArticleTomato, Tutorials and Case Studies
2010 Tomato Disease Workshop Presentations Accessing Sequence Resources Application of ANOVA for Plant Breeding: Single Marker Analysis Example using ANOVA in a Balanced Population (Sample SAS...
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